[quote=121744]FYI – the wiki needs to be updated. Specifically Step 5. In RetroPie 3.6, there is no more “Configure joystick/controller for use with RetroArch” option.
That’s why the section you are referring to reads “This section is for Wheezy based RetroPie (pre version 3.4)” in the title.
There is no step 5 in the section “This section is for Jessie based RetroPie (version 3.4 and later)”, which would be the right section for setting up your controller in RetroPie 3.6.