Post count: 4

Okay. I have updated the retropie-setup script, then re-install emulationstation from binary (menu 5 in retropie-setup), and reboot.
Then I have configured the controls again. After a reboot (over emulationstation menu) is does not ask for a reconfiguration. But when I choose shutdown, it asks after a restart again.

Here is the content of the files before the reconfiguration of the gamepad:

… and after the reconfiguration: